IL_7RYF_067
3D structure
- PDB id
- 7RYF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 7RYF|1|A|A|1934, 7RYF|1|A|U|1940, 7RYF|1|A|U|1959
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7RYF_067 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1455
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.2
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
7RYF|1|A|C|1930
7RYF|1|A|G|1931
7RYF|1|A|A|1932
7RYF|1|A|A|1933
7RYF|1|A|A|1934
7RYF|1|A|5MU|1935
7RYF|1|A|U|1936
7RYF|1|A|C|1937
7RYF|1|A|C|1938
7RYF|1|A|U|1939
7RYF|1|A|U|1940
7RYF|1|A|G|1941
*
7RYF|1|A|C|1957
7RYF|1|A|C|1958
7RYF|1|A|U|1959
7RYF|1|A|G|1960
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: