IL_7RYF_116

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7RYF|1|a|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_116 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1372

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7RYF|1|a|G|143
7RYF|1|a|G|144
7RYF|1|a|A|145
7RYF|1|a|C|146
7RYF|1|a|A|147
7RYF|1|a|A|148
7RYF|1|a|C|149
*
7RYF|1|a|G|164
7RYF|1|a|C|165
7RYF|1|a|U|166
7RYF|1|a|A|167
7RYF|1|a|A|168
7RYF|1|a|U|169
7RYF|1|a|A|170
7RYF|1|a|C|171

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20