IL_7RYF_145

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7RYF|1|a|C|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_145 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.493

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7RYF|1|a|G|930
7RYF|1|a|C|931
7RYF|1|a|A|932
*
7RYF|1|a|U|1377
7RYF|1|a|U|1378
7RYF|1|a|C|1379
7RYF|1|a|C|1380
7RYF|1|a|C|1381

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain v

Transfer RNA; tRNA