IL_7RYF_162

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_162 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1037

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7RYF|1|a|C|1300
7RYF|1|a|G|1301
7RYF|1|a|G|1302
7RYF|1|a|A|1303
7RYF|1|a|U|1304
7RYF|1|a|U|1305
*
7RYF|1|a|A|1326
7RYF|1|a|U|1327
7RYF|1|a|G|1328
7RYF|1|a|A|1329
7RYF|1|a|A|1330
7RYF|1|a|G|1331

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13