IL_7RYF_164

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_164 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1295

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RYF|1|a|G|1398
7RYF|1|a|4OC|1399
7RYF|1|a|C|1400
7RYF|1|a|C|1401
*
7RYF|1|a|G|1494
7RYF|1|a|UR3|1495
7RYF|1|a|A|1496
7RYF|1|a|A|1497
7RYF|1|a|C|1498

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain w

mRNA