IL_7RYF_178

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGUAG*UGAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_178 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2532

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7RYF|1|A|U|1469
7RYF|1|A|G|1470
7RYF|1|A|U|1471
7RYF|1|A|A|1472
7RYF|1|A|G|1473
*
7RYF|1|A|U|1509
7RYF|1|A|G|1510
7RYF|1|A|A|1511
7RYF|1|A|G|1512
7RYF|1|A|A|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains