IL_7RYF_180

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAGG*CCC

Length

8 nucleotides

Bulged bases

7RYF|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_180 not in the Motif Atlas

Geometric match to IL_6M0X_001

Geometric discrepancy: 0.2312

The information below is about IL_6M0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7RYF|1|A|G|1842
7RYF|1|A|A|1843
7RYF|1|A|A|1844
7RYF|1|A|G|1845
7RYF|1|A|G|1846
*
7RYF|1|A|C|1888
7RYF|1|A|C|1889
7RYF|1|A|C|1890

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA