IL_7RYG_006

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.106

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7RYG|1|A|G|195
7RYG|1|A|G|196
7RYG|1|A|A|197
7RYG|1|A|A|198
7RYG|1|A|G|199
7RYG|1|A|U|200
7RYG|1|A|G|201
*
7RYG|1|A|C|208
7RYG|1|A|U|209
7RYG|1|A|C|210
7RYG|1|A|A|211
7RYG|1|A|G|212
7RYG|1|A|U|213
7RYG|1|A|A|214
7RYG|1|A|C|215

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28