IL_7RYG_017

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7RYG|1|A|G|799, 7RYG|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7RYG|1|A|G|672
7RYG|1|A|A|673
7RYG|1|A|A|674
7RYG|1|A|A|675
7RYG|1|A|C|676
*
7RYG|1|A|G|797
7RYG|1|A|U|798
7RYG|1|A|G|799
7RYG|1|A|A|800
7RYG|1|A|U|801
7RYG|1|A|A|802
7RYG|1|A|G|803
7RYG|1|A|C|804

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15