IL_7RYG_038

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAAGGC*GUCGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_038 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3036

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7RYG|1|A|G|1035
7RYG|1|A|A|1036
7RYG|1|A|A|1037
7RYG|1|A|G|1038
7RYG|1|A|G|1039
7RYG|1|A|C|1040
*
7RYG|1|A|G|1109
7RYG|1|A|U|1110
7RYG|1|A|C|1111
7RYG|1|A|G|1112
7RYG|1|A|G|1113
7RYG|1|A|C|1114

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain U

50S ribosomal protein L25