IL_7RYG_042

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7RYG|1|A|U|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_042 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0765

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7RYG|1|A|C|1203
7RYG|1|A|G|1204
7RYG|1|A|A|1205
7RYG|1|A|U|1206
7RYG|1|A|G|1207
7RYG|1|A|A|1208
7RYG|1|A|A|1209
7RYG|1|A|G|1210
*
7RYG|1|A|U|1229
7RYG|1|A|G|1230
7RYG|1|A|G|1231
7RYG|1|A|A|1232
7RYG|1|A|G|1233

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20