IL_7RYG_118

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7RYG|1|a|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_118 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7RYG|1|a|G|143
7RYG|1|a|G|144
7RYG|1|a|A|145
7RYG|1|a|C|146
7RYG|1|a|A|147
7RYG|1|a|A|148
7RYG|1|a|C|149
*
7RYG|1|a|G|164
7RYG|1|a|C|165
7RYG|1|a|U|166
7RYG|1|a|A|167
7RYG|1|a|A|168
7RYG|1|a|U|169
7RYG|1|a|A|170
7RYG|1|a|C|171

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20