IL_7RYH_060

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7RYH|1|A|A|1797, 7RYH|1|A|C|1812, 7RYH|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYH_060 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1065

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7RYH|1|A|U|1794
7RYH|1|A|G|1795
7RYH|1|A|C|1796
7RYH|1|A|A|1797
7RYH|1|A|A|1798
7RYH|1|A|A|1799
7RYH|1|A|C|1800
*
7RYH|1|A|G|1809
7RYH|1|A|G|1810
7RYH|1|A|A|1811
7RYH|1|A|C|1812
7RYH|1|A|G|1813
7RYH|1|A|U|1814
7RYH|1|A|A|1815
7RYH|1|A|U|1816
7RYH|1|A|A|1817

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2