IL_7S0S_006

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.093

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7S0S|1|C|G|187
7S0S|1|C|G|188
7S0S|1|C|A|189
7S0S|1|C|A|190
7S0S|1|C|G|191
7S0S|1|C|U|192
7S0S|1|C|G|193
*
7S0S|1|C|C|200
7S0S|1|C|U|201
7S0S|1|C|C|202
7S0S|1|C|A|203
7S0S|1|C|G|204
7S0S|1|C|U|205
7S0S|1|C|A|206
7S0S|1|C|C|207

Current chains

Chain C

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28

Chain f

50S ribosomal protein L35