IL_7S0S_007

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1165

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7S0S|1|C|U|239
7S0S|1|C|G|240
7S0S|1|C|A|241
7S0S|1|C|G|242
7S0S|1|C|U|243
7S0S|1|C|A|244
7S0S|1|C|G|245
*
7S0S|1|C|C|253
7S0S|1|C|G|254
7S0S|1|C|A|255
7S0S|1|C|A|256
7S0S|1|C|A|257
7S0S|1|C|G|258

Current chains

Chain C

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L15

Chain f

50S ribosomal protein L35