IL_7S0S_039

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_039 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1009

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7S0S|1|C|C|1122
7S0S|1|C|C|1123
7S0S|1|C|C|1124
7S0S|1|C|C|1125
7S0S|1|C|U|1126
7S0S|1|C|A|1127
7S0S|1|C|A|1128
7S0S|1|C|G|1129
*
7S0S|1|C|C|1269
7S0S|1|C|G|1270

Current chains

Chain C

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L13

Chain S

50S ribosomal protein L20