IL_7S0S_040

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

7S0S|1|C|C|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_040 not in the Motif Atlas

Homologous match to IL_4WF9_038

Geometric discrepancy: 0.4246

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7S0S|1|C|G|1129
7S0S|1|C|C|1130
7S0S|1|C|G|1131
*
7S0S|1|C|C|1268
7S0S|1|C|C|1269

Current chains

Chain C

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L13

Chain S

50S ribosomal protein L20