IL_7S0S_066

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_066 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.393

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7S0S|1|C|C|1694
7S0S|1|C|U|1695
7S0S|1|C|G|1696
7S0S|1|C|U|1697
7S0S|1|C|A|1698
7S0S|1|C|G|1699
*
7S0S|1|C|U|1735
7S0S|1|C|G|1736
7S0S|1|C|A|1737
7S0S|1|C|G|1738
7S0S|1|C|A|1739
7S0S|1|C|G|1740

Current chains

Chain C

23S rRNA

Nearby chains