IL_7S0S_078

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7S0S|1|C|G|2018, 7S0S|1|C|U|2033, 7S0S|1|C|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_078 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0806

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7S0S|1|C|U|2015
7S0S|1|C|G|2016
7S0S|1|C|C|2017
7S0S|1|C|G|2018
7S0S|1|C|A|2019
7S0S|1|C|A|2020
7S0S|1|C|G|2021
*
7S0S|1|C|C|2030
7S0S|1|C|G|2031
7S0S|1|C|A|2032
7S0S|1|C|U|2033
7S0S|1|C|G|2034
7S0S|1|C|U|2035
7S0S|1|C|A|2036
7S0S|1|C|U|2037
7S0S|1|C|A|2038

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2