IL_7S0S_088

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7S0S|1|C|A|2162, 7S0S|1|C|U|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_088 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1689

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

7S0S|1|C|C|2158
7S0S|1|C|G|2159
7S0S|1|C|A|2160
7S0S|1|C|A|2161
7S0S|1|C|A|2162
7S0S|1|C|U|2163
7S0S|1|C|U|2164
7S0S|1|C|C|2165
7S0S|1|C|C|2166
7S0S|1|C|U|2167
7S0S|1|C|U|2168
7S0S|1|C|G|2169
*
7S0S|1|C|C|2185
7S0S|1|C|C|2186
7S0S|1|C|U|2187
7S0S|1|C|G|2188

Current chains

Chain C

23S rRNA

Nearby chains

Chain B

16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA