IL_7S0S_094

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_094 not in the Motif Atlas

Geometric match to IL_5TBW_021

Geometric discrepancy: 0.1828

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7S0S|1|C|G|2317
7S0S|1|C|U|2318
7S0S|1|C|G|2319
*
7S0S|1|C|C|2416
7S0S|1|C|C|2417
7S0S|1|C|U|2418

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain I

50S ribosomal protein L9