IL_7S0S_104

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_104 not in the Motif Atlas

Homologous match to IL_4WF9_090

Geometric discrepancy: 0.1139

The information below is about IL_4WF9_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7S0S|1|C|G|2678
7S0S|1|C|G|2679
*
7S0S|1|C|C|2720
7S0S|1|C|A|2721
7S0S|1|C|C|2722

Current chains

Chain C

23S rRNA

Nearby chains

Chain 3

ribosomal protein bL37

Chain E

50S ribosomal protein L3

Chain O

50S ribosomal protein L16