IL_7S0S_112

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

7S0S|1|C|A|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_112 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1083

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

7S0S|1|C|U|2746
7S0S|1|C|G|2747
*
7S0S|1|C|C|2764
7S0S|1|C|A|2765
7S0S|1|C|A|2766
7S0S|1|C|G|2767

Current chains

Chain C

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L13

Chain g

50S ribosomal protein L36