IL_7S0S_120

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_120 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.177

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7S0S|1|C|G|3059
7S0S|1|C|A|3060
7S0S|1|C|C|3061
*
7S0S|1|C|G|3098
7S0S|1|C|C|3099
7S0S|1|C|A|3100
7S0S|1|C|C|3101

Current chains

Chain C

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain R

50S ribosomal protein L19