IL_7S0S_124

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7S0S|1|i|A|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_124 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.143

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7S0S|1|i|C|18
7S0S|1|i|G|19
*
7S0S|1|i|C|66
7S0S|1|i|A|67
7S0S|1|i|G|68

Current chains

Chain i

5S rRNA

Nearby chains

Chain C

Large subunit ribosomal RNA; LSU rRNA

Chain Q

50S ribosomal protein L18