IL_7S1G_106

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7S1G|1|I|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1G_106 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3001

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7S1G|1|I|G|1087
7S1G|1|I|A|1088
7S1G|1|I|A|1089
7S1G|1|I|A|1090
7S1G|1|I|G|1091
*
7S1G|1|I|C|1100
7S1G|1|I|U|1101
7S1G|1|I|C|1102

Current chains

Chain I

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L36