3D structure

PDB id
7S1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic linezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1H_025 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.06
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

7S1H|1|C|C|504
7S1H|1|C|G|505
7S1H|1|C|G|506
7S1H|1|C|C|507
7S1H|1|C|U|508
7S1H|1|C|A|509
7S1H|1|C|A|510
7S1H|1|C|C|511
*
7S1H|1|C|G|540
7S1H|1|C|G|541

Current chains

Chain C
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S4
Chain t
30S ribosomal protein S12

Coloring options:


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