3D structure

PDB id
7S1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic linezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
7S1H|1|I|A|1127, 7S1H|1|I|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1H_104 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.063
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7S1H|1|I|G|1024
7S1H|1|I|G|1025
7S1H|1|I|G|1026
7S1H|1|I|A|1027
7S1H|1|I|A|1028
7S1H|1|I|A|1029
7S1H|1|I|C|1030
*
7S1H|1|I|G|1124
7S1H|1|I|G|1125
7S1H|1|I|A|1126
7S1H|1|I|A|1127
7S1H|1|I|G|1128
7S1H|1|I|A|1129
7S1H|1|I|U|1130
7S1H|1|I|G|1131
7S1H|1|I|U|1132
7S1H|1|I|A|1133
7S1H|1|I|A|1134
7S1H|1|I|C|1135
7S1H|1|I|G|1136
7S1H|1|I|G|1137
7S1H|1|I|G|1138
7S1H|1|I|G|1139
7S1H|1|I|C|1140

Current chains

Chain I
23S rRNA

Nearby chains

Chain L
50S ribosomal protein L3
Chain R
50S ribosomal protein L13
Chain U
50S ribosomal protein L16
Chain m
50S ribosomal protein L36

Coloring options:


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