IL_7S1I_012

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7S1I|1|C|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1I_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1298

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7S1I|1|C|G|147
7S1I|1|C|G|148
7S1I|1|C|A|149
7S1I|1|C|U|150
7S1I|1|C|A|151
7S1I|1|C|A|152
7S1I|1|C|C|153
*
7S1I|1|C|G|168
7S1I|1|C|C|169
7S1I|1|C|U|170
7S1I|1|C|A|171
7S1I|1|C|A|172
7S1I|1|C|U|173
7S1I|1|C|A|174
7S1I|1|C|C|175

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20