IL_7S1I_014
3D structure
- PDB id
- 7S1I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 7S1I|1|C|U|244, 7S1I|1|C|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7S1I_014 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.0677
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7S1I|1|C|G|242
7S1I|1|C|A|243
7S1I|1|C|U|244
7S1I|1|C|U|245
7S1I|1|C|A|246
7S1I|1|C|G|247
*
7S1I|1|C|C|277
7S1I|1|C|G|278
7S1I|1|C|A|279
7S1I|1|C|C|280
7S1I|1|C|G|281
7S1I|1|C|A|282
7S1I|1|C|U|283
7S1I|1|C|C|284
Current chains
- Chain C
- 16S rRNA
Nearby chains
- Chain t
- 30S ribosomal protein S12
- Chain y
- 30S ribosomal protein S17
Coloring options: