IL_7S1I_058

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7S1I|1|C|C|1400, 7S1I|1|C|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1I_058 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0906

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7S1I|1|C|C|1399
7S1I|1|C|C|1400
7S1I|1|C|G|1401
*
7S1I|1|C|C|1501
7S1I|1|C|A|1502
7S1I|1|C|A|1503
7S1I|1|C|G|1504

Current chains

Chain C

16S rRNA

Nearby chains

Chain 4

mRNA

Chain A

Transfer RNA; tRNA