IL_7S1I_087

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7S1I|1|I|G|776, 7S1I|1|I|A|788, 7S1I|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1I_087 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7S1I|1|I|G|775
7S1I|1|I|G|776
7S1I|1|I|G|777
*
7S1I|1|I|C|787
7S1I|1|I|A|788
7S1I|1|I|A|789
7S1I|1|I|U|790
7S1I|1|I|C|791

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain a

50S ribosomal protein L22

Chain k

50S ribosomal protein L34