IL_7S1I_159

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1I_159 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1227

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7S1I|1|I|C|2466
7S1I|1|I|C|2467
7S1I|1|I|A|2468
7S1I|1|I|A|2469
7S1I|1|I|G|2470
*
7S1I|1|I|C|2480
7S1I|1|I|G|2481
7S1I|1|I|A|2482
7S1I|1|I|C|2483
7S1I|1|I|G|2484

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36