IL_7S1J_015

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7S1J|1|C|U|244, 7S1J|1|C|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_015 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0855

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7S1J|1|C|G|242
7S1J|1|C|A|243
7S1J|1|C|U|244
7S1J|1|C|U|245
7S1J|1|C|A|246
7S1J|1|C|G|247
*
7S1J|1|C|C|277
7S1J|1|C|G|278
7S1J|1|C|A|279
7S1J|1|C|C|280
7S1J|1|C|G|281
7S1J|1|C|A|282
7S1J|1|C|U|283
7S1J|1|C|C|284

Current chains

Chain C

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S12

Chain y

30S ribosomal protein S17