IL_7S1J_024

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_024 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1271

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7S1J|1|C|G|450
7S1J|1|C|A|451
7S1J|1|C|A|452
7S1J|1|C|G|453
7S1J|1|C|G|454
7S1J|1|C|G|455
*
7S1J|1|C|C|477
7S1J|1|C|A|478
7S1J|1|C|U|479
7S1J|1|C|U|480
7S1J|1|C|G|481
7S1J|1|C|A|482
7S1J|1|C|C|483

Current chains

Chain C

16S rRNA

Nearby chains

Chain x

30S ribosomal protein S16