IL_7S1J_035
3D structure
- PDB id
- 7S1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7S1J_035 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0638
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
7S1J|1|C|A|673
7S1J|1|C|G|674
7S1J|1|C|A|675
7S1J|1|C|A|676
7S1J|1|C|U|677
7S1J|1|C|U|678
*
7S1J|1|C|A|712
7S1J|1|C|G|713
7S1J|1|C|G|714
7S1J|1|C|A|715
7S1J|1|C|A|716
7S1J|1|C|U|717
Current chains
- Chain C
- 16S rRNA
Nearby chains
- Chain 3
- 30S ribosomal protein S21
- Chain H
- 30S ribosomal protein S6
- Chain K
- 50S ribosomal protein L2
- Chain r
- 30S ribosomal protein S11
- Chain z
- 30S ribosomal protein S18
Coloring options: