3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1J_040 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.0711
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

7S1J|1|C|G|887
7S1J|1|C|G|888
7S1J|1|C|A|889
7S1J|1|C|G|890
7S1J|1|C|U|891
7S1J|1|C|A|892
7S1J|1|C|C|893
7S1J|1|C|G|894
*
7S1J|1|C|U|905
7S1J|1|C|A|906
7S1J|1|C|A|907
7S1J|1|C|A|908
7S1J|1|C|A|909
7S1J|1|C|C|910

Current chains

Chain C
16S rRNA

Nearby chains

Chain I
Large subunit ribosomal RNA; LSU rRNA
Chain t
30S ribosomal protein S12

Coloring options:


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