IL_7S1J_048

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7S1J|1|C|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0714

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7S1J|1|C|U|1052
7S1J|1|C|G|1053
7S1J|1|C|C|1054
7S1J|1|C|A|1055
7S1J|1|C|U|1056
*
7S1J|1|C|A|1204
7S1J|1|C|U|1205
7S1J|1|C|G|1206

Current chains

Chain C

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain q

30S ribosomal protein S10

Chain v

30S ribosomal protein S14