IL_7S1J_110

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7S1J|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_110 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0901

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7S1J|1|I|C|1208
7S1J|1|I|U|1209
7S1J|1|I|G|1210
7S1J|1|I|C|1211
7S1J|1|I|G|1212
7S1J|1|I|A|1213
7S1J|1|I|A|1214
7S1J|1|I|G|1215
*
7S1J|1|I|U|1234
7S1J|1|I|G|1235
7S1J|1|I|G|1236
7S1J|1|I|A|1237
7S1J|1|I|G|1238

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20