IL_7S1J_162

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7S1J|1|I|G|2576, 7S1J|1|I|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_162 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0621

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7S1J|1|I|C|2510
7S1J|1|I|U|2511
7S1J|1|I|C|2512
*
7S1J|1|I|G|2574
7S1J|1|I|C|2575
7S1J|1|I|G|2576
7S1J|1|I|A|2577
7S1J|1|I|G|2578

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain i

50S ribosomal protein L32