IL_7S1J_168
3D structure
- PDB id
- 7S1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7S1J_168 not in the Motif Atlas
- Geometric match to IL_5J7L_346
- Geometric discrepancy: 0.0816
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7S1J|1|I|C|2652
7S1J|1|I|U|2653
7S1J|1|I|A|2654
7S1J|1|I|G|2655
7S1J|1|I|U|2656
7S1J|1|I|A|2657
7S1J|1|I|C|2658
*
7S1J|1|I|G|2663
7S1J|1|I|G|2664
7S1J|1|I|A|2665
7S1J|1|I|C|2666
7S1J|1|I|C|2667
7S1J|1|I|G|2668
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain O
- 50S ribosomal protein L6
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