IL_7S1J_190

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_190 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0566

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7S1J|1|I|U|1851
7S1J|1|I|U|1852
7S1J|1|I|A|1853
7S1J|1|I|A|1854
7S1J|1|I|U|1855
7S1J|1|I|U|1856
7S1J|1|I|G|1857
7S1J|1|I|A|1858
7S1J|1|I|U|1859
7S1J|1|I|G|1860
*
7S1J|1|I|U|1882
7S1J|1|I|U|1883
7S1J|1|I|G|1884
7S1J|1|I|A|1885
7S1J|1|I|U|1886
7S1J|1|I|C|1887
7S1J|1|I|G|1888
7S1J|1|I|A|1889
7S1J|1|I|A|1890
7S1J|1|I|G|1891

Current chains

Chain I

23S rRNA

Nearby chains