IL_7S1K_041

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

7S1K|1|C|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_041 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2398

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7S1K|1|C|C|924
7S1K|1|C|G|925
7S1K|1|C|G|926
7S1K|1|C|G|927
*
7S1K|1|C|U|1390
7S1K|1|C|U|1391
7S1K|1|C|G|1392

Current chains

Chain C

16S rRNA

Nearby chains

Chain 4

mRNA

Chain G

30S ribosomal protein S5