3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1K_080 not in the Motif Atlas
Homologous match to IL_5J7L_258
Geometric discrepancy: 0.0866
The information below is about IL_5J7L_258
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7S1K|1|I|U|606
7S1K|1|I|U|607
7S1K|1|I|A|608
7S1K|1|I|A|609
7S1K|1|I|C|610
*
7S1K|1|I|G|618
7S1K|1|I|G|619
7S1K|1|I|G|620
7S1K|1|I|A|621
7S1K|1|I|G|622

Current chains

Chain I
23S rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15

Coloring options:


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