IL_7S1K_082

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7S1K|1|I|G|801, 7S1K|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0668

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7S1K|1|I|G|674
7S1K|1|I|A|675
7S1K|1|I|A|676
7S1K|1|I|A|677
7S1K|1|I|C|678
*
7S1K|1|I|G|799
7S1K|1|I|A|800
7S1K|1|I|G|801
7S1K|1|I|A|802
7S1K|1|I|U|803
7S1K|1|I|A|804
7S1K|1|I|G|805
7S1K|1|I|C|806

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15