IL_7S1K_125

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_125 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2659

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7S1K|1|I|C|1526
7S1K|1|I|G|1527
7S1K|1|I|A|1528
7S1K|1|I|G|1529
7S1K|1|I|G|1530
*
7S1K|1|I|C|1541
7S1K|1|I|U|1542
7S1K|1|I|G|1543
7S1K|1|I|A|1544
7S1K|1|I|A|1545
7S1K|1|I|G|1546

Current chains

Chain I

23S rRNA

Nearby chains