3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
C(PSU)GA*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1K_159 not in the Motif Atlas
Geometric match to IL_4OQU_001
Geometric discrepancy: 0.3037
The information below is about IL_4OQU_001
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_15698.4
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

7S1K|1|I|C|2456
7S1K|1|I|PSU|2457
7S1K|1|I|G|2458
7S1K|1|I|A|2459
*
7S1K|1|I|U|2493
7S1K|1|I|G|2494
7S1K|1|I|G|2495

Current chains

Chain I
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.215 s