IL_7S1K_185

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAGCG*CGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_185 not in the Motif Atlas

Homologous match to IL_4LFB_066

Geometric discrepancy: 0.3089

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

7S1K|1|C|C|1129
7S1K|1|C|A|1130
7S1K|1|C|G|1131
7S1K|1|C|C|1132
7S1K|1|C|G|1133
*
7S1K|1|C|C|1141
7S1K|1|C|G|1142
7S1K|1|C|G|1143

Current chains

Chain C

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9