IL_7S9U_006

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1196

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7S9U|1|A|G|191
7S9U|1|A|G|192
7S9U|1|A|A|193
7S9U|1|A|A|194
7S9U|1|A|C|195
7S9U|1|A|U|196
7S9U|1|A|G|197
*
7S9U|1|A|C|204
7S9U|1|A|U|205
7S9U|1|A|A|206
7S9U|1|A|A|207
7S9U|1|A|G|208
7S9U|1|A|U|209
7S9U|1|A|A|210
7S9U|1|A|C|211

Current chains

Chain A

RNA (2436-MER)

Nearby chains