IL_7S9U_007

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GGAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_007 not in the Motif Atlas

Homologous match to IL_4WF9_012

Geometric discrepancy: 0.2876

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_46387.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|G|304
7S9U|1|A|A|305
7S9U|1|A|C|306
*
7S9U|1|A|G|410
7S9U|1|A|G|411
7S9U|1|A|A|412
7S9U|1|A|U|413
7S9U|1|A|C|414

Current chains

Chain A

RNA (2436-MER)

Nearby chains